Stem-loop aca-mir-1388

Accession

MI0018748

Description

Anolis carolinensis aca-mir-1388 precursor miRNA

Gene family

MIPF0000805; mir-1388

Sequence

aggugaggaguuuuuugAGGACUGUCUAACCUGAGAAUGgugaaucaugaaggucaAUCUCAGGUCCGUCAGCCCACgagaagcugccuccagagc
..(.(((((((((((((.((.(((.(..((((((((.(((.............))).))))))))..).))).)).))))))))).))))).....

Structure

---ag u    -         A  A   U UA        A   ugaau 
     g gagg aguuuuuug GG CUG C  ACCUGAGA UGg     c
     | |||| ||||||||| || ||| |  |||||||| |||     a
     c cucc ucgaagagC CC GAC G  UGGACUCU acu     u
cgaga -    g         A  C   U CC        A   ggaag 

Annotation confidence Not enough data

Genome context

chr4: 156036001-156036096 [+]

Mature aca-miR-1388-5p

• Accession: MIMAT0021760
• Description: Anolis carolinensis aca-miR-1388-5p mature miRNA
• Sequence: 18 - AGGACUGUCUAACCUGAGAAUG - 39
• Evidence: experimental ; Illumina [1]

Mature aca-miR-1388-3p

• Accession: MIMAT0021761
• Description: Anolis carolinensis aca-miR-1388-3p mature miRNA
• Sequence: 57 - AUCUCAGGUCCGUCAGCCCAC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107