Stem-loop aca-mir-130b

Accession

MI0018735

Description

Anolis carolinensis aca-mir-130b precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

acggggcgucugcccACUCUUUCCCCUGUUGCACUACuguccaacgucacagcuagCAGUGCAAUAAUGAAAGGGCgucagccgcucc
..((((((.(((..(.(((((((...(((((((((.((((........)))).....)))))))))..))))))).).))).))))))

Structure

ac      u   cc A       CCC         ----A    cca 
  ggggcg cug  c CUCUUUC   UGUUGCACU     Cugu   a
  |||||| |||  | |||||||   |||||||||     ||||    
  ccucgc gac  g GGGAAAG   AUAACGUGA     gaca   c
--      c   -u C       -UA         Cgauc    cug 

Annotation confidence Not enough data

Genome context

GL343282.1: 1188352-1188439 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-130b

Mature aca-miR-130b-5p

• Accession: MIMAT0021742
• Description: Anolis carolinensis aca-miR-130b-5p mature miRNA
• Sequence: 16 - ACUCUUUCCCCUGUUGCACUAC - 37
• Evidence: experimental ; Illumina [1]

Mature aca-miR-130b-3p

• Accession: MIMAT0021743
• Description: Anolis carolinensis aca-miR-130b-3p mature miRNA
• Sequence: 57 - CAGUGCAAUAAUGAAAGGGC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107