miRBase entry: aca-let-7a

Stem-loop aca-let-7a


Accession
MI0018701
Description
Anolis carolinensis aca-let-7a precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention aca-let-7a
(1 sentences)

Sequence

cugcacugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucauacccaccacugggagauaaCUAUACAGUCUACUGUCUUUCcuaaagaggcagaaaa
((((.((.(((((.(((((((((((((((((((((.....(((...((((....)))).))))))))))))))))))))))))))))).))..))))....

Structure
----    -a  g     U                     uuagg   aua    c 
    cugc  cu uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca c
    ||||  || ||||| |||||||||||||||||||||     |||   ||||  
    gacg  ga aucCU UUCUGUCAUCUGACAUAUCaa     uag   gggu a
aaaa    ga  a     -                     -----   --a    c 


Annotation confidence Not enough data
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Genome context
GL343225.1: 748885-748985 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aca-let-7a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-let-7a-5p

Accession MIMAT0021692
Description Anolis carolinensis aca-let-7a-5p mature miRNA
Sequence 14 - UGAGGUAGUAGGUUGUAUAGUU - 35
Evidence experimental
Illumina [1]

Mature aca-let-7a-3p

Accession MIMAT0021693
Description Anolis carolinensis aca-let-7a-3p mature miRNA
Sequence 65 - CUAUACAGUCUACUGUCUUUC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107