miRBase entry: aca-mir-5393

Stem-loop aca-mir-5393


Accession
MI0018700
Description
Anolis carolinensis aca-mir-5393 precursor miRNA


Sequence

gauuugcguuUUGAGUUGGUUCAGAAGAGCUuaugagaaacaauuuauuucuacauauucucuuuuugaaccuucucuagaccagcuu
...(((.((((.(((..((((((((((((..(((((((((.......))))).))))..))).)))))))))..))).)))))))...

Structure
gau   c    U   UU         -   CU    -     ca 
   uug guuU GAG  GGUUCAGAA GAG  uaug agaaa  a
   ||| |||| |||  ||||||||| |||  |||| |||||  u
   gac caga cuc  ccaaguuuu cuc  auac ucuuu  u
uuc   -    u   uu         u   uu    a     au 


Annotation confidence Not enough data
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Genome context
GL343221.1: 2561489-2561576 [-]

Database links

Mature aca-miR-5393

Accession MIMAT0021691
Description Anolis carolinensis aca-miR-5393 mature miRNA
Sequence 11 - UUGAGUUGGUUCAGAAGAGCU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107