Stem-loop sequence sbi-MIR5389

Accession

MI0018696 (change log)

Description

Sorghum bicolor miR5389 stem-loop

Literature search

1 open access papers mention sbi-MIR5389
(2 sentences)

Stem-loop

   ugcagccacaaacauaugcugcaaguacuaaugcuu          a   u  c     a u     cacua 
5'                                     uguucgcuug guu au agccg g cugaa     c
                                       |||||||||| ||| || ||||| | |||||      
3'                                     acaagugaac cga ua ucggu c gacuu     u
   -----------------------------------g          -   c  u     a c     uaauu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr8: 4826959-4827068 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018696

Mature sequence sbi-miR5389

• Accession: MIMAT0021687
• Sequence: 42 - gcuugaguuuaucagccgagu - 62
• Evidence: experimental; SOLiD [1]

References

1. PMID:21740560 "Characterization of the small RNA component of the transcriptome from grain and sweet sorghum stems" Calvino M, Bruggmann R, Messing J BMC Genomics. 12:356(2011).