miRBase entry: gma-MIR1513c

Stem-loop gma-MIR1513c


Accession
MI0018683
Description
Glycine max gma-MIR1513c precursor miRNA
Gene family
MIPF0001360; MIR1513

Literature search
2 open access papers mention gma-MIR1513c
(9 sentences)

Sequence

gaucugaUAUGAGAGAAAGCCAUGACuuacacacgcauugaaaucuaaguuaaauauguguguaagucauggcauuaucucauaucuaauc
(((..(((((((((....(((((((((((((((((.(((.............))).)))))))))))))))))....)))))))))..)))

Structure
   cu         GAAA                 c   gaaau 
gau  gaUAUGAGA    GCCAUGACuuacacacg auu     c
|||  |||||||||    ||||||||||||||||| |||     u
cua  cuauacucu    cgguacugaaugugugu uaa     a
   au         auua                 a   auuga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr17: 1395193-1395283 [-]

Database links

Mature gma-miR1513c

Accession MIMAT0021674
Description Glycine max gma-miR1513c mature miRNA
Sequence 8 - UAUGAGAGAAAGCCAUGAC - 26
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307