Stem-loop sequence gma-MIR396i

Accession

MI0018680 (change log)

Description

Glycine max miR396i stem-loop

Gene family

MIPF0000047; MIR396

Literature search

25 open access papers mention gma-MIR396i
(145 sentences)

Stem-loop

   u      c       uc            c          -uc  ------------u     u    u   u 
5'  ggcccu uuuguau  uuccacagcuuu uugaacugca   ca             agagu ccuu gca g
    |||||| |||||||  |||||||||||| ||||||||||   ||             ||||| |||| |||  
3'  cuggga agacaua  agggugucgaaa aacuuggcgu   gu             ucuca ggaa cgu c
   a      u       ga            u          uuu  uccacacccucgu     c    c   a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr17: 8774041-8774175 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR396i

• gma-MIR396i: chr17: 8774041-8774175 [+]
• gma-MIR396d: chr17: 8782240-8782347 [-]

Database links

• miRBase Tracker:MI0018680

Mature sequence gma-miR396i-5p

• Accession: MIMAT0021669
• Sequence: 18 - uuccacagcuuucuugaacug - 38
• Evidence: experimental; Illumina [1]

Mature sequence gma-miR396i-3p

• Accession: MIMAT0021670
• Sequence: 100 - guucaauaaagcugugggaag - 120
• Evidence: experimental; Illumina [1]

References

1. PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses" Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R BMC Genomics. 12:307(2011).