Stem-loop sequence gma-MIR172i

Accession

MI0018670 (change log)

Description

Glycine max miR172i stem-loop

Gene family

MIPF0000035; MIR172

Literature search

27 open access papers mention gma-MIR172i
(122 sentences)

Stem-loop

     a         g           a   cgc    uuugc        c gga      -a   uuaauuauacau       u 
5' gc ggugcagca caucaagauuc cac   cuaa     uaggacuu a   cugcac  cgc            acauaua a
   || ||||||||| ||||||||||| |||   ||||     |||||||| |   ||||||  |||            |||||||  
3' cg cuacgucgu guaguucuaag gug   gauu     aucuugaa u   ggcgug  gug            uguauau c
     a         a           g   -ua    ---uu        a -aa      ag   ---uuucucgau       a 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr15: 2892841-2893001 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018670

Mature sequence gma-miR172i-5p

• Accession: MIMAT0021659
• Previous IDs: gma-miR172i
• Sequence: 7 - gcagcagcaucaagauucaca - 27
• Evidence: experimental; Illumina [1]

Mature sequence gma-miR172i-3p

• Accession: MIMAT0022996
• Sequence: 137 - ggaaucuugaugaugcugcau - 157
• Evidence: experimental; Illumina [2]

References

1. PMID:21663675 "Identification of novel soybean microRNAs involved in abiotic and biotic stresses" Kulcheski FR, de Oliveira LF, Molina LG, Almerao MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimaraes FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R BMC Genomics. 12:307(2011).
2. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).