miRBase entry: gma-MIR5370

Stem-loop gma-MIR5370


Accession
MI0018626
Description
Glycine max gma-MIR5370 precursor miRNA


Sequence

guuugcaCUAAAGAUUGUCCAAAAGGAAuauuguuuuaugcagaagacaaauuacaucggauaagaaaaaucacaccacauaauugcugcauugcuuuagaucucuauuucugcauaaaacaauauuccuuuuggacaaucuuuagugcaaac
(((((((((((((((((((((((((((((((((((((((((((((...........((......))...................((......))..(((....))).)))))))))))))))))))))))))))))))))))))))))))))

Structure
                                             gacaaauuacaucggauaagaaaaaucacaccacauaauugcugcauugcuu   a 
guuugcaCUAAAGAUUGUCCAAAAGGAAuauuguuuuaugcagaa                                                    uag u
|||||||||||||||||||||||||||||||||||||||||||||                                                    |||  
caaacgugauuucuaacagguuuuccuuauaacaaaauacgucuu                                                    auc c
                                             ---------------------------------------------------u   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr14: 6870104-6870256 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR5370
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR5370

Accession MIMAT0021607
Description Glycine max gma-miR5370 mature miRNA
Sequence 8 - CUAAAGAUUGUCCAAAAGGAA - 28
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307