Stem-loop sequence osa-MIR5337a

Accession

MI0018519 (change log)

Previous IDs

osa-MIR5337

Description

Oryza sativa miR5337 stem-loop

Literature search

3 open access papers mention osa-MIR5337a
(4 sentences)

Stem-loop

   c  ucau       u    guc                ----   a                            a   cu a          cauc      uuuuuu    gauucacuga 
5'  cu    uucaaau acuu   guucuagcuuuguccu    uaa cauguauaucuuugaccaucaauuuuua aaa  c uaugguuuaa    auauga      uuua          c
    ||    ||||||| ||||   ||||||||||||||||    ||| |||||||||||||||||||||||||||| |||  | ||||||||||    ||||||      ||||           
3'  ga    gaguuua ugaa   caagaucgaaacagga    guu guacauauagaaacugguaguuaaaaau uuu  g auaucaaguu    uauacu      aaau          a
   a  ucau       -    aaa                uuca   c                            c   ag c          ---u      caacau    aauuucauaa 

Deep sequencing

27 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr4: 5621964-5622201 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018519

Mature sequence osa-miR5337a

• Accession: MIMAT0021410
• Previous IDs: osa-miR5337
• Sequence: 11 - aaauuacuugucguucuagcu - 31
• Deep sequencing: 13 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000028E9A9_39947

References

1. PMID:21791435 "Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)" Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q J Exp Bot. 62:4943-4954(2011).