miRBase entry: rmi-mir-5334

Stem-loop rmi-mir-5334


Accession
MI0018516
Description
Rhipicephalus microplus rmi-mir-5334 precursor miRNA

Literature search
1 open access papers mention rmi-mir-5334
(1 sentences)

Sequence

cuugugaagccuucuucgguuuggccggcuggcucuugaguaaccacguccccagauucugugucugcuuuggcUGUUGGUUCAUCACCACCAGUCGGUGUGgcuguaccuguugaagcuucugggu
.....(((((.(((..((((.(((((((((((((..(((..(((((((.((.(((((.....)))))....)).)).)))))..))).....))))))).)))))).))).)..)))))))).....

Structure
cuugu     c   uu -   u      -       ---cu   gu     -  u  ---c     u 
     gaagc uuc  c ggu uggccg gcuggcu     uga  aacca cg cc    cagau c
     ||||| |||  | ||| |||||| |||||||     |||  ||||| || ||    ||||| u
     cuucg aag  g cca gucgGU UGGCUGA     ACU  UUGGU GU gg    gucug g
ugggu     -   uu u   u      G       CCACC   AC     U  c  uuuc     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rmi-miR-5334

Accession MIMAT0021407
Description Rhipicephalus microplus rmi-miR-5334 mature miRNA
Sequence 75 - UGUUGGUUCAUCACCACCAGUCGGUGUG - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328