miRBase entry: rmi-mir-5329

Stem-loop rmi-mir-5329


Accession
MI0018511
Description
Rhipicephalus microplus rmi-mir-5329 precursor miRNA

Literature search
1 open access papers mention rmi-mir-5329
(1 sentences)

Sequence

ggucgacagaggagagcgagaaagcgcgggaagagccagagacgcagcgagaacggcgacgaacgaagagucugcgaauugcgAGCGACUUGAGCGGUUGUGCGUUGUgc
(.((..(...)..)).).....((((((.((...((..(((.(((.((((...((..(((.........)))..))..))))..))).)))..))..)).))))))....

Structure
ggucgacagaggagagcgagaa      g  aga  ca   a   -a    gaa  gc   gaa 
                      agcgcg ga   gc  gag cgc  gcga   cg  gac   c
                      |||||| ||   ||  ||| |||  ||||   ||  |||   g
                      UUGCGU UU   CG  UUC GCG  cguu   gc  cug   a
------------------cgUG      G  -GG  AG   A   Ag    -aa  gu   aga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature rmi-miR-5329

Accession MIMAT0021402
Description Rhipicephalus microplus rmi-miR-5329 mature miRNA
Sequence 84 - AGCGACUUGAGCGGUUGUGCGUUGU - 108
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328