miRBase entry: isc-mir-5315

Stem-loop isc-mir-5315


Accession
MI0018495
Description
Ixodes scapularis isc-mir-5315 precursor miRNA

Literature search
1 open access papers mention isc-mir-5315
(1 sentences)

Sequence

cgggaacucgggugcgagggugAACACAACAUCCGGACAAGCACgugcgcguuucauguucuugccccgaaguugucuccgccuucaaaacccgcaagcuacg
..((....(((((..(((((((...(((((.((.((.((((.(((((.......))))).)))).)).)).)))))...)))))))...)))))....))...

Structure
-cg  aacu     -gc       AAC     A  C  A    C     cg 
   gg    cgggu   gagggug   ACAAC UC GG CAAG ACgug  c
   ||    |||||   |||||||   ||||| || || |||| |||||  g
   uc    gccca   cuuccgc   uguug ag cc guuc uguac  u
gca  gaac     aaa       cuc     a  c  c    u     uu 


Annotation confidence Not enough data
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Genome context
DS734036: 1283486-1283588 [+]

Database links

Mature isc-miR-5315

Accession MIMAT0021386
Description Ixodes scapularis isc-miR-5315 mature miRNA
Sequence 23 - AACACAACAUCCGGACAAGCAC - 44
Evidence not_experimental

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328