miRBase entry: isc-mir-5308

Stem-loop isc-mir-5308


Accession
MI0018487
Description
Ixodes scapularis isc-mir-5308 precursor miRNA

Literature search
1 open access papers mention isc-mir-5308
(4 sentences)

Sequence

cuacgcaauugcaccaaaacccucUCUGUGCUGUGGAGGUAAUAUAUagcugucaacauauauacguccaaagcacugaggggguuuuacucacucaucaucgag
....((....))...(((((((((((.(((((.((((.(((.(((((..........)))))))).)))).))))).))))))))))).....(((......)))

Structure
--cuacgcaauugcacc           U     G    G   A     agcu 
                 aaaacccucUC GUGCU UGGA GUA UAUAU    g
                 ||||||||||| ||||| |||| ||| |||||     
                 uuuugggggag cacga accu cau auaua    u
gagcuacuacucacuca           u     a    g   -     caac 


Annotation confidence Not enough data
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Genome context
DS911923: 134615-134719 [-]

Database links

Mature isc-miR-5308

Accession MIMAT0021378
Description Ixodes scapularis isc-miR-5308 mature miRNA
Sequence 25 - UCUGUGCUGUGGAGGUAAUAUAU - 47
Evidence not_experimental

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328