miRBase entry: isc-mir-5306

Stem-loop isc-mir-5306


Accession
MI0018485
Description
Ixodes scapularis isc-mir-5306 precursor miRNA

Literature search
1 open access papers mention isc-mir-5306
(1 sentences)

Sequence

gccggauuaccagcuugccuggggaggagcaccgcguguuacaacuucguagggagaauggccggAGAGUAUCACGUGACGCUCCUUccucggcaaguggcagcgucgcc
(((((....)).(((((((.((((((((((..((((((.(((..((((...((........)))))).))).))))))..)))))))))).)))))))))).........

Structure
---------   ggauuacca       u          ac      u   aa    gua  gag 
         gcc         gcuugcc ggggaggagc  cgcgug uac  cuuc   gg   a
         |||         ||||||| ||||||||||  |||||| |||  ||||   ||    
         cgg         ugaacgg uccUUCCUCG  GUGCAC AUG  GAgg   cc   a
ccgcugcga   ---------       c          CA      U   -A    ---  ggu 


Annotation confidence Not enough data
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Genome context
DS717196: 247001-247110 [+]

Database links

Mature isc-miR-5306

Accession MIMAT0021376
Description Ixodes scapularis isc-miR-5306 mature miRNA
Sequence 66 - AGAGUAUCACGUGACGCUCCUU - 87
Evidence not_experimental

References

  1. PubMed ID: 21699734
    Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus
    Barrero RA, Keeble-Gagnère G, Zhang B, Moolhuijzen P, Ikeo K, Tateno Y, Gojobori T, Guerrero FD, Lew-Tabor A, Bellgard M
    BMC Genomics (2011) 12:328