Stem-loop sequence sly-MIR5303

Accession

MI0018480 (change log)

Description

Solanum lycopersicum miR5303 stem-loop

Gene family

MIPF0001432; MIR5303

Literature search

3 open access papers mention sly-MIR5303
(5 sentences)

Stem-loop

                 c      u  ugccaaac     uc  a    u          
5' guugcucggacucu caaaaa gu        ccgug  ug uccu caaaaauac 
   |||||||||||||| |||||| ||        |||||  || |||| |||||||| a
3' caacgagcuugaga guuuuu ca        gguau  ac agga guuuuuauu 
                 a      c  --------     cc  -    u          

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr4: 11973314-11973417 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018480

Mature sequence sly-miR5303

• Accession: MIMAT0020767
• Sequence: 84 - uuuuugaagaguucgagcaac - 104
• Evidence: experimental; Illumina [1]

References

1. PMID:21443685 "Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns" Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T Plant J. 67:232-246(2011).