Stem-loop sly-MIR5302a

Accession

MI0018479

Description

Solanum lycopersicum sly-MIR5302a precursor miRNA

Gene family

MIPF0001975; MIR5302

Literature search

3 open access papers mention sly-MIR5302a
(4 sentences)

Sequence

aagcauuuucagcaaaaugaaaugcuauaguuggaaaguucuaaacauuucggaugauaguuccaaaguaacaaaucucguuugaaugucucuugaucaacuuuuauauauauauauauauauauauauccAAACGAGGUUUGUUACUUUGGaauaucuuucgaaaucugaaaaacuuuucaacuauagcauuauuuuuugcggaaaauuuguuu
((((((((((.((((((...((((((((((((((((((((......((((((((.((((.((((((((((((((((((((((((...(((....))).......((((((((((....))))))))))..)))))))))))))))))))))))))))).))))))))......))))))))))))))))))))...)))))).)))))..)))))

Structure

     --     a      uga                    cuaaac        u    g                        aaugucucuugaucaacuuu          u 
aagca  uuuuc gcaaaa   aaugcuauaguuggaaaguu      auuucgga gaua uuccaaaguaacaaaucucguuug                    uauauauaua a
|||||  ||||| ||||||   ||||||||||||||||||||      |||||||| |||| ||||||||||||||||||||||||                    ||||||||||  
uuugu  aaaag cguuuu   uuacgauaucaacuuuucaa      uaaagcuu cuau aaGGUUUCAUUGUUUGGAGCAAAc                    auauauauau u
     uu     g      uua                    aaaguc        u    -                        ------------------cu          a 

Annotation confidence Not enough data

Genome context

Unknown

Mature sly-miR5302a

• Accession: MIMAT0020766
• Description: Solanum lycopersicum sly-miR5302a mature miRNA
• Sequence: 132 - AAACGAGGUUUGUUACUUUGG - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21443685
   Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns
   "Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T"
   "Plant J (2011) 67:232-246