Stem-loop sly-MIR482e

Accession

MI0018478

Description

Solanum lycopersicum sly-MIR482e precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

21 open access papers mention sly-MIR482e
(266 sentences)

Sequence

gaucugugcuauggaaauauugauggcguugaaagggaugagaguauugggaaguuguugguUGUGGGUGGGGUGGAAAGAUUugauaaaucuaauuuuaaagagauuaaaUCUUUCCUACUCCUCCCAUACCcaugacuuccacuagcuucucccuuucuucauuugucaucuccuuugcuaaguuc
((.((..((...(((......(((((((..((((((((.((.(((....(((((((((.(((.(((((.((((((((((((((((((...(((........))).))))))))))))).))))).)))))))).)))))))))....)))))))))))))......))))))))))...))..)).))

Structure

  u  gu  uau   aauauu       ----uu        u  g   auug         u   U     U     -             aaa   aau 
ga cu  gc   gga      gauggcg      gaaaggga ga agu    ggaaguugu ggu GUGGG GGGGU GGAAAGAUUugau   ucu   u
|| ||  ||   |||      |||||||      |||||||| || |||    ||||||||| ||| ||||| ||||| |||||||||||||   |||    
cu ga  cg   ccu      cuacugu      cuuucccu cu ucg    ccuucagua CCA UACCC CCUCA CCUUUCUaaauua   aga   u
  u  au  uuu   ------       uuacuu        -  -   auca         c   -     U     U             --g   aau 

Annotation confidence Not enough data

Genome context

chr4: 56023736-56023923 [+]

Mature sly-miR482e-5p

• Accession: MIMAT0020765
• Description: Solanum lycopersicum sly-miR482e-5p mature miRNA
• Sequence: 63 - UGUGGGUGGGGUGGAAAGAUU - 83
• Evidence: experimental ; Illumina [1-2]

Mature sly-miR482e-3p

• Accession: MIMAT0032124
• Description: Solanum lycopersicum sly-miR482e-3p mature miRNA
• Sequence: 112 - UCUUUCCUACUCCUCCCAUACC - 133
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21443685
   Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns
   "Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T"
   "Plant J (2011) 67:232-246


2. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739