Stem-loop sequence sly-MIR5300

Accession

MI0018477 (change log)

Description

Solanum lycopersicum miR5300 stem-loop

Literature search

4 open access papers mention sly-MIR5300
(13 sentences)

Stem-loop

   u    aaaau  u    c       c      u   a     ---g     a          cc        -------       ug  --c         uca   g     u      uc      ----g     ca 
5'  gacc     uc ucuu cccaguc aggcau cca caguu    auaac ucuagaucug  aauacuuu       guauuuu  uu   uucuauuuu   cau acauc ucaaaa  uacuau     agcuu  u
    ||||     || |||| ||||||| |||||| ||| |||||    ||||| ||||||||||  ||||||||       |||||||  ||   |||||||||   ||| ||||| ||||||  ||||||     |||||   
3'  cugg     ag agaa ggguuag uucgua ggu gucga    uauug aggucuagac  uuguggaa       caugaaa  aa   aggauaaaa   gua uguag aguuuu  guggua     ucgaa  c
   a    -auuc  u    a       u      u   g     auug     g          --        aaaugau       gu  auu         ucc   g     u      ga      aagaa     ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr4: 423125-423389 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sly-MIR5300

• sly-MIR6025: chr4: 421941-422072 [-]
• sly-MIR5300: chr4: 423125-423389 [+]

Database links

• RNAcentral:URS000075DD22_4081
• miRBase Tracker:MI0018477

Mature sequence sly-miR5300

• Accession: MIMAT0020764
• Sequence: 17 - uccccaguccaggcauuccaac - 38
• Evidence: experimental; Illumina [1]

References

1. PMID:21443685 "Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns" Mohorianu I, Schwach F, Jing R, Lopez-Gomollon S, Moxon S, Szittya G, Sorefan K, Moulton V, Dalmay T Plant J. 67:232-246(2011).