Stem-loop mtr-MIR5287a

Accession

MI0018450

Description

Medicago truncatula mtr-MIR5287a precursor miRNA

Gene family

MIPF0000875; MIR2593

Literature search

1 open access papers mention mtr-MIR5287a
(1 sentences)

Sequence

aaaaauacaccuuccgcucacuaauauaagcaaaaaucuaauuuuuuagauacauucaguuaaugauguauguggucuuuauuauauguuauauacaucauuaauugaauauauuuaaaaaauauauuuuUGCUUAUAUUAGUGACCGGAGGAUcuacuacaau
..........((((((.((((((((((((((((((((...((((((((((((.((((((((((((((((((((((.(..........))))))))))))))))))))))).))))))))))))..)))))))))))))))))))).))))))............

Structure

--aaaaauacac      c                    cua            c                      u uuua 
            cuuccg ucacuaauauaagcaaaaau   auuuuuuagaua auucaguuaaugauguaugugg c    u
            |||||| ||||||||||||||||||||   |||||||||||| |||||||||||||||||||||| |     
            GGAGGC AGUGAUUAUAUUCGUuuuua   uaaaaaauuuau uaaguuaauuacuacauauauu g    u
uaacaucaucUA      C                    -ua            a                      - uaua 

Annotation confidence Not enough data

Genome context

chr2: 17475454-17475617 [-]

Mature mtr-miR5287a

• Accession: MIMAT0021347
• Description: Medicago truncatula mtr-miR5287a mature miRNA
• Sequence: 131 - UGCUUAUAUUAGUGACCGGAGGAU - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010