miRBase entry: mtr-MIR5285c

Stem-loop mtr-MIR5285c


Accession
MI0018448
Description
Medicago truncatula mtr-MIR5285c precursor miRNA
Gene family
MIPF0001292; MIR5285


Sequence

aaacacuauuaggauuggagucucuugguuacgggaagggauUGGGACUUUGGGUAGAAUUAGGCGgaagacuuauucuuguaacccauugauuucucuuuguaacgaaacuca
.................((((...((.((((((((.(((((((((.....((((((((((.((........)).)))))....)))))))))))))).)))))))).)))))).

Structure
aaacacuauuaggauug    cuc  g        a         GACUU     ----     U  GCG 
                 gagu   uu guuacggg agggauUGG     UGGGU    AGAAU AG   g
                 ||||   || |||||||| |||||||||     |||||    ||||| ||    
                 cuca   aa caauguuu ucuuuaguu     accca    ucuua uc   a
----------------a    ---  g        c         -----     augu     u  aga 


Annotation confidence Not enough data
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Genome context
chr3: 39172452-39172565 [+]

Database links

Mature mtr-miR5285c

Accession MIMAT0021345
Description Medicago truncatula mtr-miR5285c mature miRNA
Sequence 43 - UGGGACUUUGGGUAGAAUUAGGCG - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010