miRBase entry: mtr-MIR2600e

Stem-loop mtr-MIR2600e


Accession
MI0018434
Description
Medicago truncatula mtr-MIR2600e precursor miRNA
Gene family
MIPF0001284; MIR2600


Sequence

gugacauuggccaaucacaaugccacaauguuuguguuucuagaguugggugacauuggccaaucacaaugccacaauguuuguguuucucucucuuucacAAGCAUUGUGGCAUUGUGAUUGGCcaaugucac
((((((((((((((((((((((((((((((((((((.....((((..(((.(((((((((..........))))........))))).))).))))..))))))))))))))))))))))))))))))))))))

Structure
                                    uuucu    uu   u     --------    caau 
gugacauuggccaaucacaaugccacaauguuugug     agag  ggg gacau        uggc    c
||||||||||||||||||||||||||||||||||||     ||||  ||| |||||        ||||     
cacuguaacCGGUUAGUGUUACGGUGUUACGAAcac     ucuc  cuc uugug        accg    a
                                    ---uu    -u   u     uuuguaac    uaac 


Annotation confidence Not enough data
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Genome context
chr3: 1808121-1808254 [-]

Database links

Mature mtr-miR2600e

Accession MIMAT0021331
Description Medicago truncatula mtr-miR2600e mature miRNA
Sequence 102 - AAGCAUUGUGGCAUUGUGAUUGGC - 125
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010