miRBase entry: mtr-MIR5281e

Stem-loop mtr-MIR5281e


Accession
MI0018427
Description
Medicago truncatula mtr-MIR5281e precursor miRNA
Gene family
MIPF0000382; MIR1122


Sequence

ccaagcaauauacucccgccgguccuauuuauaagagaauuuuuugucaacaaaaguugauguaucuaguuaaaaauucaguccaaauacuguugaccuaaacuucUCUUAUAAAUAGGACCGGAGGGAGuacuucacauaac
..........(((((((.(((((((((((((((((((((.(((..(((((((....(((........................)))....)))))))..))).))))))))))))))))))))).)))))))...........

Structure
-ccaagcaaua       g                     u   uu       aaag   auguaucuagu 
           uacuccc ccgguccuauuuauaagagaa uuu  gucaaca    uug           u
           ||||||| ||||||||||||||||||||| |||  |||||||    |||            
           auGAGGG GGCCAGGAUAAAUAUUCUcuu aaa  caguugu    aac           a
caauacacuuc       A                     c   uc       caua   cugacuuaaaa 


Annotation confidence Not enough data
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Genome context
chr6: 21484129-21484271 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5281e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5281e

Accession MIMAT0021324
Description Medicago truncatula mtr-miR5281e mature miRNA
Sequence 107 - UCUUAUAAAUAGGACCGGAGGGAG - 130
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010