Stem-loop sequence mtr-MIR5281d

AccessionMI0018426 (change log)
DescriptionMedicago truncatula miR5281d stem-loop
Gene family MIPF0000382; MIR1122
Stem-loop 
   -----uu   ug  acuuuuaaau    a                        a   a       a     ga         aacuga 
5'        acu  uu          uacu ccuccgguccuauuuauaagagaa uuu ggucaac aaagu  auguauuug      a
          |||  ||          |||| |||||||||||||||||||||||| ||| ||||||| |||||  |||||||||      u
3'        ugg  ag          auga ggaggccaggauaaauauucucuu aaa ccaguug uuuca  uacauagau      u
   cacucuu   gu  -aaacguaac    g                        a   c       a     ac         caauuu
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (JCVI_Mt3.5.2) Overlapping transcripts
chr2: 13445238-13445410 [-]
intergenic
Clustered miRNAs
< 10kb from mtr-MIR5281d
mtr-MIR169jchr2: 13454079-13454208 [+]
mtr-MIR169cchr2: 13450873-13450957 [+]
mtr-MIR5281dchr2: 13445238-13445410 [-]
Database links

Mature sequence mtr-miR5281d

Accession MIMAT0021323
Sequence

125 -  

ucuuauaaauaggaccggagggag

 - 148

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).