Stem-loop mtr-MIR5281d

Accession

MI0018426

Description

Medicago truncatula mtr-MIR5281d precursor miRNA

Gene family

MIPF0000382; MIR1122

Sequence

uuacuuguuacuuuuaaauuacuaccuccgguccuauuuauaagagaaauuuaggucaacaaaagugaauguauuugaacugaauuuuuaacuagauacaucaacuuuaguugacccaaaauucUCUUAUAAAUAGGACCGGAGGGAGuacaaugcaaagauggguuucucac
..(((((((..........((((.((((((((((((((((((((((((.(((.(((((((.(((((..(((((((((...............)))))))))..))))).))))))).))).)))))))))))))))))))))))).)))).........))))))).......

Structure

-----uu       acuuuuaaau    a                        a   a       a     ga         aacuga 
       acuuguu          uacu ccuccgguccuauuuauaagagaa uuu ggucaac aaagu  auguauuug      a
       |||||||          |||| |||||||||||||||||||||||| ||| ||||||| |||||  |||||||||      u
       uggguag          auGA GGAGGCCAGGAUAAAUAUUCUcuu aaa ccaguug uuuca  uacauagau      u
cacucuu       -aaacguaac    G                        a   c       a     ac         caauuu 

Annotation confidence Not enough data

Genome context

chr2: 13445238-13445410 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR5281d

Mature mtr-miR5281d

• Accession: MIMAT0021323
• Description: Medicago truncatula mtr-miR5281d mature miRNA
• Sequence: 125 - UCUUAUAAAUAGGACCGGAGGGAG - 148
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010