miRBase entry: mtr-MIR5275

Stem-loop mtr-MIR5275


Accession
MI0018416
Description
Medicago truncatula mtr-MIR5275 precursor miRNA


Sequence

cccaaaaauccaagcaugugucuccagcuuaaggcucaggaaaaagaauggacagcaucagggcaaguugccccgaugguuuguagacaacuugccccgaugcugacuauuucuuuuccugagccuuuAGCUGGAGUCACAUGCUUGAAUUUuugggagug
(((((((((.((((((((((.((((((((.((((((((((((((.((((((.(((((((.(((((((((((..(((....)))..).)))))))))).))))))).)))))).)))))))))))))).)))))))).)))))))))).)))))))))....

Structure
----         c          u        u              a      a       a          - cc   u 
    cccaaaaau caagcaugug cuccagcu aaggcucaggaaaa gaaugg cagcauc gggcaaguug c  cga g
    ||||||||| |||||||||| |||||||| |||||||||||||| |||||| ||||||| |||||||||| |  |||  
    ggguuUUUA GUUCGUACAC GAGGUCGA uuccgaguccuuuu uuuauc gucguag cccguucaac g  guu g
guga         A          U        u              c      a       c          a au   u 


Annotation confidence Not enough data
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Genome context
chr5: 14870220-14870380 [-]

Database links

Mature mtr-miR5275

Accession MIMAT0021313
Description Medicago truncatula mtr-miR5275 mature miRNA
Sequence 129 - AGCUGGAGUCACAUGCUUGAAUUU - 152
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010