miRBase entry: mtr-MIR5271c

Stem-loop mtr-MIR5271c


Accession
MI0018402
Description
Medicago truncatula mtr-MIR5271c precursor miRNA
Gene family
MIPF0001281; MIR5271


Sequence

guucgguuCGGAUAAUUGUGGUUACUAACGGUucaguuugguugugaauuguuaucaaaauaauuguucgguucgagaau
.(((((.((((((((((((......((((((((((.........)))))))))).....)))))))))))).)))))...

Structure
--g     u            GGUUAC          guu 
   uucgg uCGGAUAAUUGU      UAACGGUuca   u
   ||||| ||||||||||||      ||||||||||   g
   gagcu ggcuuguuaaua      auuguuaagu   g
uaa     u            -aaacu          guu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 16003740-16003819 [-]

Database links

Mature mtr-miR5271c

Accession MIMAT0021299
Description Medicago truncatula mtr-miR5271c mature miRNA
Sequence 9 - CGGAUAAUUGUGGUUACUAACGGU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010