miRBase entry: mtr-MIR5268b

Stem-loop mtr-MIR5268b


Accession
MI0018395
Description
Medicago truncatula mtr-MIR5268b precursor miRNA
Gene family
MIPF0001365; MIR5268


Sequence

uaguauaaaCCAGAGUGGAAUGAAGAUAUGGUUaucagugaggcagugguaugacaacaaagucugaauguuucuggaagccauguugauuaagaaauuucgguuuaagaga
.....((((((.((((....(((.(((((((((.(((..((((((....((.(((......)))))..))))))))).)))))))))..)))....)))).)))))).....

Structure
uagua      A    GGAA   -A         a   gu      gugg  u   aa 
     uaaaCC GAGU    UGA  GAUAUGGUU uca  gaggca    ua gac  c
     |||||| ||||    |||  ||||||||| |||  ||||||    || |||   
     auuugg uuua    auu  uuguaccga ggu  cuuugu    gu cug  a
agaga      c    aaga   ag         a   --      --aa  -   aa 


Annotation confidence Not enough data
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Genome context
chr1: 29702439-29702550 [+]

Database links

Mature mtr-miR5268b

Accession MIMAT0021292
Description Medicago truncatula mtr-miR5268b mature miRNA
Sequence 10 - CCAGAGUGGAAUGAAGAUAUGGUU - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010