miRBase entry: mtr-MIR5267f

Stem-loop mtr-MIR5267f


Accession
MI0018384
Description
Medicago truncatula mtr-MIR5267f precursor miRNA
Gene family
MIPF0001276; MIR5267


Sequence

gcaaaucuuauAGGCAUUUGCUAGAAUACACCCACuuauuuuucagaaggaguauuuuagcaagugaauaacuaaaaagug
..........((..(((((((((((((((.((..((........))..)).)))))))))))))))..))...........

Structure
-gcaaaucuua  GG               A  CA  uau 
           uA  CAUUUGCUAGAAUAC CC  Cu   u
           ||  ||||||||||||||| ||  ||    
           au  gugaacgauuuuaug gg  ga   u
gugaaaaauca  aa               a  aa  cuu 


Annotation confidence Not enough data
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Genome context
chr1: 33986835-33986915 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5267f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5267f

Accession MIMAT0021281
Description Medicago truncatula mtr-miR5267f mature miRNA
Sequence 12 - AGGCAUUUGCUAGAAUACACCCAC - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010