miRBase entry: mtr-MIR5267c

Stem-loop mtr-MIR5267c


Accession
MI0018381
Description
Medicago truncatula mtr-MIR5267c precursor miRNA
Gene family
MIPF0001276; MIR5267


Sequence

gcaaauccuauAGGCAUUUGCUAGAAUACACCCACuuauuuuuuagaaggaguauuuuagcaagugaauaacuaaaaagug
..........((..(((((((((((((((.((..((........))..)).)))))))))))))))..))...........

Structure
-gcaaauccua  GG               A  CA  uau 
           uA  CAUUUGCUAGAAUAC CC  Cu   u
           ||  ||||||||||||||| ||  ||    
           au  gugaacgauuuuaug gg  ga   u
gugaaaaauca  aa               a  aa  uuu 


Annotation confidence Not enough data
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Genome context
chr2: 28907247-28907327 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5267c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5267c

Accession MIMAT0021278
Description Medicago truncatula mtr-miR5267c mature miRNA
Sequence 12 - AGGCAUUUGCUAGAAUACACCCAC - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010