miRBase entry: mtr-MIR5256

Stem-loop mtr-MIR5256


Accession
MI0018358
Description
Medicago truncatula mtr-MIR5256 precursor miRNA
Gene family
MIPF0000145; MIR475


Sequence

caauauccuuauUAAUGGAUUAUGUAAGAUUAAaaugguugaugaagccuugaaucucuucacagaaaugcauugcaaacccaauacaguaucuuacaacacucuuauugauggauucugca
((..((((..(((((((((...((((((((.....((((((.....((..((.((.(((....))).)).))..)).....)))).))..))))))))....)).)))))))))))..))..

Structure
--  au    uu       -  -UUA        UAAaa  -    augaa  cu  a  c   u 
  ca  aucc  auUAAUG GA    UGUAAGAU     ug guug     gc  ug au ucu c
  ||  ||||  ||||||| ||    ||||||||     || ||||     ||  || || |||  
  gu  uagg  uaguuau cu    acauucua     ac uaac     cg  ac ua aga a
ac  cu    --       u  caca        ---ug  a    ccaaa  uu  g  a   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 9574365-9574486 [-]

Database links

Mature mtr-miR5256

Accession MIMAT0021254
Description Medicago truncatula mtr-miR5256 mature miRNA
Sequence 13 - UAAUGGAUUAUGUAAGAUUAA - 33
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010