miRBase entry: mtr-MIR5249

Stem-loop mtr-MIR5249


Accession
MI0018350
Description
Medicago truncatula mtr-MIR5249 precursor miRNA


Sequence

caugugcaaaACUUAGGGGGCAGUUUUGUAGucuuuuuucuuugagggccaaaaucgcaacuuuggaaaaguuagggggcuaaaacugcuaucaagccuuauuuuuaaacaauucucaucgauucggcuuucaucuauuuauuuuaggcuuaauugcacuuuuugcccacuaucuuuccaaaaguugcgauuuuggcccucuaccuaauuaaaauacaaaacagccuccuauguauugguguaac
......(((.((.((((((((.((((((((.............((((((((((((((((((((((((((.(.(((.((((.((((.(((.((.((((((..............................................)))))).)).))).)))).)))).))).)))))).))))))))))))))))))))).............)))))))).)))))))).)).))).......

Structure
-caugug   a  U        A        Gucuuuuuucuuu                     -     a u   g    u    c   u  c      uauuuuuaaacaauucucaucg 
       caa AC UAGGGGGC GUUUUGUA             gagggccaaaaucgcaacuuu ggaaa g uag gggc aaaa ugc au aagccu                      a
       ||| || |||||||| ||||||||             ||||||||||||||||||||| ||||| | ||| |||| |||| ||| || ||||||                       
       guu ug auccuccg caaaacau             cucccgguuuuagcguugaaa ccuuu c auc cccg uuuu acg ua uucgga                      u
caaugug   a  u        a        aaaauuaauccau                     a     - u   a    u    c   u  a      uuuuauuuaucuacuuucggcu 


Annotation confidence Not enough data
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Genome context
chr3: 12779582-12779826 [+]

Database links

Mature mtr-miR5249

Accession MIMAT0021245
Description Medicago truncatula mtr-miR5249 mature miRNA
Sequence 11 - ACUUAGGGGGCAGUUUUGUAG - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010