Stem-loop mtr-MIR5242

Accession

MI0018343

Description

Medicago truncatula mtr-MIR5242 precursor miRNA

Sequence

uagcauuucuuuggcauagcucauuucauaagaaUUGUAGAAACAAGCGAUGUCAaggaaaauacc
.....((((((((((((.(((..((((((((...)))).))))..))).)))))))))))).....

Structure

uagca            a   ca    -    g 
     uuucuuuggcau gcu  uuuc auaa  
     |||||||||||| |||  |||| |||| a
     aaaggaACUGUA CGA  AAAG UGUU  
ccaua            G   AC    A    a 

Annotation confidence Not enough data

Genome context

chr2: 14987203-14987268 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5242

Mature mtr-miR5242

• Accession: MIMAT0021238
• Description: Medicago truncatula mtr-miR5242 mature miRNA
• Sequence: 35 - UUGUAGAAACAAGCGAUGUCA - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010