miRBase entry: mtr-MIR5231

Stem-loop mtr-MIR5231


Accession
MI0018321
Description
Medicago truncatula mtr-MIR5231 precursor miRNA


Sequence

uuagaggugcUUAUGCAAGUAGAUAAGCUCAaauaagccaaaucaaagaggagcuuguuuggauuuacuuauuugagcuuauguauuggcauaagaacuuugcaa
...(((((.(((((((.((((.((((((((((((((((((((.(((........)))))))).....))))))))))))))).)))).))))))).)))))....

Structure
-uua     g       A    G               -----     u   aga 
    gaggu cUUAUGC AGUA AUAAGCUCAaauaag     ccaaa caa   g
    ||||| ||||||| |||| |||||||||||||||     ||||| |||    
    uuuca gaauacg uuau uauucgaguuuauuc     gguuu guu   g
aacg     a       g    g               auuua     -   cga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr7: 957949-958053 [+]

Database links

Mature mtr-miR5231

Accession MIMAT0021216
Description Medicago truncatula mtr-miR5231 mature miRNA
Sequence 11 - UUAUGCAAGUAGAUAAGCUCA - 31
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553