Stem-loop sequence mtr-MIR2592bd

Accession

MI0018307 (change log)

Description

Medicago truncatula miR2592bd stem-loop

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592bd
(2 sentences)

Stem-loop

   -     c                            g             u            u      c         -  g         a      aag   caa  aa 
5'  accug caaacaacaggacucgagcauuucgcuc gcauucauguuuu ccuuugaaaaga uaaauu uuguuaggc ug uuuagauga gguauu   ugu   gg  u
    ||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| ||||||||| || ||||||||| ||||||   |||   ||   
3'  uggac guuuguuguccugaguucguaaaguggg cguaaguacaaaa ggaaacuuuucu auuuaa aacaauccg ac aaaucuacu ccauaa   acg   cc  a
   u     a                            g             -            u      a         c  a         a      --g   --a  aa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr7: 13077376-13077594 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0018307

Mature sequence mtr-miR2592bd

• Accession: MIMAT0021201
• Sequence: 75 - aggcugguuuagaugaaggua - 95
• Evidence: experimental; Illumina [1]

References

1. PMID:21571671 "Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis" Devers EA, Branscheid A, May P, Krajinski F Plant Physiol. 156:1990-2010(2011).