Stem-loop mtr-MIR2592ay

Accession

MI0018302

Description

Medicago truncatula mtr-MIR2592ay precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592ay
(2 sentences)

Sequence

aucaaaagcuugauuccgccagaagaucgucauuaguuaggguaaggugcauuccaacugcaacaauugucuuaccucugaaaugggguaauucaaacuugccaaacggccaggacucaagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcacaccuaacaaaaauuuauucuuuucaaaggaaaacaugaaugccgggugaaaugcuugagucagguuguuuggcaaguuugaauuuaccccauucaaagguaagacaauuguuguaguuggaaugcacauuccaacugcaacaauuaucuuacucuggauggggcaauucaaacuuguuaa
.....(((.((((((((((((((((((.((...(((((.(((....(((((((((((((((((((((((((((((((.((((.((((((((((((((((((((((((((((..((((((((((((((((((((((((((((((((.((((((((((((.((((((.((((((((.((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).))..)))))))).)))))).)))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))))))).)))))))))))).)))))))))))))))))))))))))))))))..)))))))).....)).))))...))))).)))))....)))).))).....

Structure

aucaa   c    ----     -     ---    c  --cau     a   uaag                               c    a        -                    ag                                u            u      c        -C  G         A     -          -       a 
     aag uuga    uuccg ccaga   agau gu     uaguu ggg    gugcauuccaacugcaacaauugucuuaccu ugaa ugggguaa uucaaacuugccaaacggcc  gacucaagcauuucgcucggcauucauguuuu ccuuugaaaaga uaaauu uuguuAGG  UG UUUAGAUGA GGUAu uaagugucaa ggaauga  
     ||| ||||    ||||| |||||   |||| ||     ||||| |||    ||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||  || ||||||||| ||||| |||||||||| ||||||| c
     uuc aacu    ggggu ggucu   ucua ua     gucaa ccu    cacguaagguugauguuguuaacagaaugga acuu accccauu aaguuugaacgguuuguugg  cugaguucguaaagugggccguaaguacaaaa ggaaacuuuucu auuuaa aacaaucc  ac aaaucuacu ccaua guucacgguu cuuuacu  
aauug   a    uaac     a     cau    u  acaac     -   --ua                               a    -        u                    -a                                -            u      a        ac  g         a     a          g       c 

Annotation confidence Not enough data

Genome context

chr3: 19276056-19276486 [-]

Mature mtr-miR2592ay

• Accession: MIMAT0021196
• Description: Medicago truncatula mtr-miR2592ay mature miRNA
• Sequence: 172 - AGGCUGGUUUAGAUGAAGGUA - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010