miRBase entry: mtr-MIR2592ap

Stem-loop mtr-MIR2592ap


Accession
MI0018293
Description
Medicago truncatula mtr-MIR2592ap precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592ap
(2 sentences)

Sequence

uuaggguaaggugcauucuaacuacaacaauugucuuaccucugaaaugggguaauucaaauuugccaaacggccaggacucaagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucucguuAGGCUGGUUUAGAUGAAGGUAuuaagugucaaggaaugaaccucauuucguuggcacuugaauaccaucaucuaaagcaagccuaacaacaauuuauucuuuucaaaggaaaacaugaaugucggacgaaaugcuugagucauguuguuugaccaguuugaauuuacccuauucaaagauaagacaauuguuguaguuggaaugcacauuucaacua
.(((......((((((((((((((((((((((((((((.((.((((.((((((((((((((((.(.((((((((...(((((((((((((((.((((((((((((((((.((((((((((((.((((((...(((((((((.(((((((((.((((((((((((((((((((((...))))))).)))))))))).))))).))))))))).).))))))))...)))))).)))))))))))))))))))))))))))).)))))))))))))))..)))))))).).)))))))).)))))))))))).)).)))))))))))))))))))))))))))).......)))

Structure
u   -gguaag                            c  c    a        -        u c        cag               c                u            u      cuc        - G         A     -          -       a 
 uag       gugcauucuaacuacaacaauugucuua cu ugaa ugggguaa uucaaauu g caaacggc   gacucaagcauuucg ucggcauucauguuuu ccuuugaaaaga uaaauu   guuAGGCU G UUUAGAUGA GGUAu uaagugucaa ggaauga  
 |||       |||||||||||||||||||||||||||| || |||| |||||||| |||||||| | ||||||||   ||||||||||||||| |||||||||||||||| |||||||||||| ||||||   |||||||| | ||||||||| ||||| |||||||||| ||||||| c
 auc       cacguaagguugauguuguuaacagaau ga acuu aucccauu aaguuuga c guuuguug   cugaguucguaaagc ggcuguaaguacaaaa ggaaacuuuucu auuuaa   caauccga c aaaucuacu ccaua guucacgguu cuuuacu  
-   aacuuua                            a  a    -        u        c a        -ua               a                -            u      caa        a g         a     a          g       c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AC146550.40: 50348-50699 [-]

Database links

Mature mtr-miR2592ap

Accession MIMAT0021187
Description Medicago truncatula mtr-miR2592ap mature miRNA
Sequence 136 - AGGCUGGUUUAGAUGAAGGUA - 156
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010