miRBase entry: mtr-MIR5227

Stem-loop mtr-MIR5227


Accession
MI0018292
Description
Medicago truncatula mtr-MIR5227 precursor miRNA


Sequence

auaacgauauUGAAGAGAAGAAGAUUGAUGAAagugaaacuuaauucggguccauacauguuaugaauuuuuaaugagcuuccaagugauguuuuugaauaugaaaccauuuagcgucuuuuuuuaguuuauauuuuuuauuaggaaugauauuaugauuuuguguggauacccuugauguuguuauguaauuugccuuguuggcaauuuuuuuaauuauaauaucacauguauuauugagccuuuuaugaaauacauaauaaaaccgcuuaauaauccauaaauauauuauaacuaaaaauccucaauaaggaaaauuacaugacaacaucaaagguaucccacacaaaaaucaugcuaucauuucucauacaauaaacauaaacaaaaaagagacacuaauugguuucaucuucaaaaucaucacuuggaagcucauucgaaucaaaauucauaacaacuauugacccuaauucaguuucacuuucguuaaucuucuucucuucaauaucauuauu
((((.((((((((((((((((((((((((((((((((((((.((((.(((((.(((..(((((((((((((.(((((((((((((((((((.(((((((.(((((((((.((((.((((((((((.((((((.(((..(((.((((((((((.((((((((((((((((((((.((((((((((((((((((((.(((((((((.....((((((.(((((((((...(((.((((((((((.((((((..........))))))..)))))))))).)))....))))))))).))))))...))))))))).)))))))))))))))))))).))))).)))))).))))))))).)))))))))).)))....))).)))))).)))))))))).)))).))))))))).))))))).)))))))))))))))))))......)))))))))))))..))).))))).)))).)))))))))))))))))))))))))))))))))))).)))).

Structure
-    c                                    u    c     c   ca             -----u                   u       u         u    c          a      a   --uu   u          u         -      -     c                    g         caauu      a         -cac   u          -c      gaaa 
 auaa gauauUGAAGAGAAGAAGAUUGAUGAAagugaaacu aauu ggguc aua  uguuaugaauuuu      aaugagcuuccaagugaug uuuugaa augaaacca uuag gucuuuuuuu guuuau uuu    uau aggaaugaua uaugauuuu gugugg auacc uugauguuguuauguaauuu ccuuguugg     uuuuua uuauaauau    aug auuauugagc  uuuuau    u
 |||| |||||||||||||||||||||||||||||||||||| |||| ||||| |||  |||||||||||||      ||||||||||||||||||| ||||||| ||||||||| |||| |||||||||| |||||| |||    ||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||||||| |||||||||     |||||| |||||||||    ||| ||||||||||  ||||||     
 uauu cuauaacuucucuucuucuaauugcuuucacuuuga uuaa cccag uau  acaauacuuaaaa      uuacucgaagguucacuac aaaacuu uacuuuggu aauc cagagaaaaa caaaua aaa    aua ucuuuacuau guacuaaaa cacacc uaugg aacuacaacaguacauuaaa ggaauaacu     aaaaau aauauuaua    uac uaauaauucg  aaaaua    a
u    a                                    c    u     u   ca             cuaagc                   u       c         u    a          a      c   uaac   c          c         a      c     a                    a         --ccu      c         uaaa   c          cc      auac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 43144770-43145287 [+]

Database links

Mature mtr-miR5227

Accession MIMAT0021186
Description Medicago truncatula mtr-miR5227 mature miRNA
Sequence 11 - UGAAGAGAAGAAGAUUGAUGAA - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010