Stem-loop mtr-MIR5225a

Accession

MI0018289

Description

Medicago truncatula mtr-MIR5225a precursor miRNA

Gene family

MIPF0001388; MIR5225

Sequence

uacacggacuUCAGUCGCAGGAGAGAUGACACcuucuguuucuaauggcaugguugcaaccaauuuuaacaggaguugucaucuuucuucgacugaaguccauaugcau
.....((((((((((((.(((((((((((((.((((((((.....(((..((....)).))).....)))))))).)))))))))))))))))))))))))........

Structure

---uacac            C             C        ucuaa   ca  g 
        ggacuUCAGUCG AGGAGAGAUGACA cuucuguu     ugg  ug u
        |||||||||||| ||||||||||||| ||||||||     |||  ||  
        ccugaagucagc uucuuucuacugu gaggacaa     acc  ac u
uacguaua            -             u        uuuua   -a  g 

Annotation confidence Not enough data

Genome context

chr6: 2480844-2480952 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR5225a

Mature mtr-miR5225a

• Accession: MIMAT0021183
• Description: Medicago truncatula mtr-miR5225a mature miRNA
• Sequence: 11 - UCAGUCGCAGGAGAGAUGACAC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010