Stem-loop mtr-MIR5217

Accession

MI0018281

Description

Medicago truncatula mtr-MIR5217 precursor miRNA

Sequence

aggucuuagaAGGUCAUUUUGAACGGUCGGAUugauuguacuuguugcuguucaggugauaggcacguuuagguccucgaaguaaacuaguuacuaaguugacuaguuuaugaagggauaguucguccgaucaagcuuguaccucuaacccu
(((..(((((.(((((.(((((.(((.((((((((.(((.(((((((((.....))))))))).))).))).(((((....((((((((((((......))))))))))))...))))).))))).))).)))))..)).)))))))).)))

Structure

   uc     A   -  -U     A   U     ugauuguacuuguugcuguucaggugauaggcacguuuag     cgaa            cu 
agg  uuaga GGU CA  UUUGA CGG CGGAU                                        guccu    guaaacuaguua  a
|||  ||||| ||| ||  ||||| ||| |||||                                        |||||    ||||||||||||   
ucc  aaucu cca gu  gaacu gcc gcuug                                        uaggg    uauuugaucagu  a
   -c     -   u  uc     a   u     ---------------------------------------a     -aag            ug 

Annotation confidence Not enough data

Genome context

chr7: 10824001-10824152 [-]

Mature mtr-miR5217

• Accession: MIMAT0021175
• Description: Medicago truncatula mtr-miR5217 mature miRNA
• Sequence: 11 - AGGUCAUUUUGAACGGUCGGAU - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010