miRBase entry: mtr-MIR5216a

Stem-loop mtr-MIR5216a


Accession
MI0018279
Description
Medicago truncatula mtr-MIR5216a precursor miRNA
Gene family
MIPF0001362; MIR5216


Sequence

agugacaguugccguugcuugagucaaaguaauaccgauagaggccaaguucgccccaggaaucgggccacuguuagcaguaccagaagugccugcugccguaUUAGGAGUGAAAAACGGUGGAAguccaua
.(.(((..((((((((((((......))))......(((((.((((..((((.......))))..)))).)))))((((((((.....))).))))).((......)).......))))))))..))))...

Structure
--a u   ag        gcuugagucaaaguaauaccgauagaggccaaguucgccccaggaaucgggccacuguuagcaguaccagaagugccugcug  gu 
   g gac  uugccguu                                                                                  cc  a
   | |||  ||||||||                                                                                  ||   
   c cug  GGUGGCAA                                                                                  GG  U
aua -   AA        ---------------------------------------------------------------------------AAAGUGA  AU 


Annotation confidence Not enough data
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Genome context
AC135504.61: 40585-40716 [-]

Database links

Mature mtr-miR5216a

Accession MIMAT0021173
Description Medicago truncatula mtr-miR5216a mature miRNA
Sequence 104 - UUAGGAGUGAAAAACGGUGGAA - 125
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010