Stem-loop mtr-MIR2592an

Accession

MI0018276

Description

Medicago truncatula mtr-MIR2592an precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592an
(2 sentences)

Sequence

aaaccugccaaacaacaggacucgagcauuucgcucggcauucauguuuuuccuuugaaaagauuaaauucuuguuaggcugguuuagauguagguauuaagugugaaggaaugaaccucauuucguuggcacuugaauaccagcgucuaaagcacgccuaacaaaaauuuauucuuuucaaaggaaaacaugaaugccgggugAAAUGCUUGAGUCCUGUUGUUuugcagguuu
((((((((.(((((((((((((((((((((((((((((((((((((((((.((((((((((((.((((((.(((((((((((.(((((((((.((((((((((((.(((((((((...))))))).)).))))))).))))).))))))))).)).))))))))).)))))).))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))

Structure

        c                                         u            u      c         -  g         a     -       g  -       a 
aaaccugc aaacaacaggacucgagcauuucgcucggcauucauguuuu ccuuugaaaaga uaaauu uuguuaggc ug uuuagaugu gguau uaagugu aa ggaauga  
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| || ||||||||| ||||| ||||||| || ||||||| c
uuuggacg uUUGUUGUCCUGAGUUCGUAAAgugggccguaaguacaaaa ggaaacuuuucu auuuaa aacaauccg ac aaaucugcg ccaua guucacg uu cuuuacu  
        u                                         -            u      a         c  g         a     a       g  g       c 

Annotation confidence Not enough data

Genome context

chr2: 28800456-28800690 [-]

Mature mtr-miR2592an

• Accession: MIMAT0021170
• Description: Medicago truncatula mtr-miR2592an mature miRNA
• Sequence: 205 - AAAUGCUUGAGUCCUGUUGUU - 225
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010