Stem-loop mtr-MIR2592af

Accession

MI0018268

Description

Medicago truncatula mtr-MIR2592af precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592af
(2 sentences)

Sequence

aacuggccaaaCAACAGGACUCAAGCAUUUCGCcccgcguucauguuuuuccuuugaaaagaauaaauuuuuauuaggcuugcuuuagaugaugguauucaagugccaacgaaaugagguucauuccuugacacuuaauaccuucaucuaaaccagcauaacaagaauuuaaucuuuucaaaggaaaaacaugaacgcugggcgaaaugcuugagucauagccguuuggcaaguu
((((.(((((((.....((((((((((((((((((.((((((((((((((((((((((((((.(((((((((.(((.(((.(.(((((((((.((((((.(((((.(((.(((.(((...)))))).))).))))))))))).)))))))))).))).))).))))))))).)))))))))))))))))))))))))).))))))))))))))))))......))))))).))))

Structure

    g       -AACAG                  c                          a         a   g   u c         u      c     c   c   a   g 
aacu gccaaaC      GACUCAAGCAUUUCGCcc gcguucauguuuuuccuuugaaaaga uaaauuuuu uua gcu g uuuagauga gguauu aagug caa gaa uga  
|||| |||||||      |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||| | ||||||||| |||||| ||||| ||| ||| ||| g
uuga cgguuug      cugaguucguaaagcggg cgcaaguacaaaaaggaaacuuuucu auuuaagaa aau cga c aaaucuacu ccauaa uucac guu cuu acu  
    a       ccgaua                  u                          a         c   a   c -         u      -     a   c   -   u 

Annotation confidence Not enough data

Genome context

chr4: 23356390-23356624 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592af

Mature mtr-miR2592af

• Accession: MIMAT0021162
• Description: Medicago truncatula mtr-miR2592af mature miRNA
• Sequence: 12 - CAACAGGACUCAAGCAUUUCGC - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010