miRBase entry: mtr-MIR2592ab

Stem-loop mtr-MIR2592ab


Accession
MI0018264
Description
Medicago truncatula mtr-MIR2592ab precursor miRNA
Gene family
MIPF0000815; MIR2592

Literature search
1 open access papers mention mtr-MIR2592ab
(2 sentences)

Sequence

aauucaaaccugccaaaCAACAGGACUCAAGCAUUUCGCucgacauucauguuuuuccuuugaaaauacuaaauucuuguuagguugguuuagaugaagguauuaagugucaaggaaugaaccucauuucauuggcaauugaauaccauuaucuaaagcacaccuaacaaaaauuuauucuuuucaaaggaaaacaugaaugccgggcgaaaugcgugacucauguuguuuggcagguuugaauuu
((((((((((((((((((((((.((.(((.((((((((((((.((((((((((((.((((((((((...((((((.(((((((((((.(((((((((.((((((...(((((((((((((...))))))).))))))....)))))).))))))))).)).))))))))).))))))...)))))))))))))))))))))).)))))))))))).))).)).)))))))))))))))))))))).

Structure
-                      G  C   A            a            u          uac      c         -  g         a      -aag      -       a 
 aauucaaaccugccaaaCAACA GA UCA GCAUUUCGCucg cauucauguuuu ccuuugaaaa   uaaauu uuguuaggu ug uuuagauga gguauu    ugucaa ggaauga  
 |||||||||||||||||||||| || ||| |||||||||||| |||||||||||| ||||||||||   |||||| ||||||||| || ||||||||| ||||||    |||||| ||||||| c
 uuaaguuuggacgguuuguugu cu agu cguaaagcgggc guaaguacaaaa ggaaacuuuu   auuuaa aacaaucca ac aaaucuauu ccauaa    acgguu cuuuacu  
u                      a  c   g            c            -          cuu      a         c  g         a      guua      a       c 


Annotation confidence Not enough data
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Genome context
chr1: 28276328-28276573 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR2592ab
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR2592ab

Accession MIMAT0021158
Description Medicago truncatula mtr-miR2592ab mature miRNA
Sequence 18 - CAACAGGACUCAAGCAUUUCGC - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010