Stem-loop mtr-MIR2592u

Accession

MI0018257

Description

Medicago truncatula mtr-MIR2592u precursor miRNA

Gene family

MIPF0000815; MIR2592

Literature search

1 open access papers mention mtr-MIR2592u
(2 sentences)

Sequence

gucaaaCAACAGGACUCAAGCAUUUCGCaagcaccucauguuucuccuuugaaaauauuaaauuuuuguuaugcugguuuagaugaagguauuaagugucaaggauugaaccucaauucgguggcacuugaauaccaucaucuaaagcaagccucacaaaaauuuauuauuuucaaagggaaaacaugagguguuuggcgaaaugcuugaguccuguuguu
....(((((((((((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((...((((.(((((((((.((((((((((((((.(((((((...)))))))..))))))))).))))).))))))))).).)))...))))))))))).))))))))))))).))))))))))))))).))))))))))))))))))))))))

Structure

guca                        -               c             u           uau   - g         a     -         -a       a 
    aaCAACAGGACUCAAGCAUUUCGC aagcaccucauguuu uccuuugaaaaua uaaauuuuugu   gcu g uuuagauga gguau uaaguguca  ggauuga  
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||   ||| | ||||||||| ||||| |||||||||  ||||||| c
    uuguuguccugaguucguaaagcg uuuguggaguacaaa gggaaacuuuuau auuuaaaaaca   cga c aaaucuacu ccaua guucacggu  cuuaacu  
----                        g               a             u           cuc   a g         a     a         gg       c 

Annotation confidence Not enough data

Genome context

chr2: 4195504-4195724 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2592u

Mature mtr-miR2592u

• Accession: MIMAT0021151
• Description: Medicago truncatula mtr-miR2592u mature miRNA
• Sequence: 7 - CAACAGGACUCAAGCAUUUCGC - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010