miRBase entry: mtr-MIR5214

Stem-loop mtr-MIR5214


Accession
MI0018254
Description
Medicago truncatula mtr-MIR5214 precursor miRNA


Sequence

ucccgucuuucuccguagucUAGCUCUAUUAACAAUUAAAUucaccguugaagguagauuuaauuguUGAUAGAGCUAGACCAUCGGAGcgagacccuu
....(((((.(((((..(((((((((((((((((((((((((.(((......))).)))))))))))))))))))))))))...))))).)))))....

Structure
uccc     u     -ua                         c   gu 
    gucuu cuccg   gucUAGCUCUAUUAACAAUUAAAUu acc  u
    ||||| |||||   ||||||||||||||||||||||||| |||   
    cagag GAGGC   CAGAUCGAGAUAGUuguuaauuuag ugg  g
uucc     c     UAC                         a   aa 


Annotation confidence Not enough data
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Genome context
chr3: 1385082-1385180 [-]

Database links

Mature mtr-miR5214-3p

Accession MIMAT0021148
Description Medicago truncatula mtr-miR5214-3p mature miRNA
Sequence 68 - UGAUAGAGCUAGACCAUCGGAG - 89
Evidence experimental
Illumina [1-3]

Mature mtr-miR5214-5p

Accession MIMAT0027101
Description Medicago truncatula mtr-miR5214-5p mature miRNA
Sequence 21 - UAGCUCUAUUAACAAUUAAAU - 41
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553

  3. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105