miRBase entry: mtr-MIR5211

Stem-loop mtr-MIR5211


Accession
MI0018251
Description
Medicago truncatula mtr-MIR5211 precursor miRNA


Sequence

ucagggaauccugUCGCAGGAGUGAUGGGACCGGCcuaugguacauauaugaauauuuaugauaugaauauuaucauauaguggugccauccuccugcgacaugauucccuucaa
..((((((((.(((((((((((.(((((.((((...(((((((...((((..(((((...)))))..)))))))))))...)))).)))))))))))))))).))))))))....

Structure
--uc        c           U     G    GCc       cau    ga     u 
    agggaauc ugUCGCAGGAG GAUGG ACCG   uauggua   auau  auauu  
    |||||||| ||||||||||| ||||| ||||   |||||||   ||||  ||||| a
    ucccuuag acagcguccuc cuacc uggu   auacuau   uaua  uauag  
aacu        u           -     g    gau       ---    ag     u 


Annotation confidence Not enough data
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Genome context
chr6: 2484503-2484617 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR5211
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR5211

Accession MIMAT0021144
Description Medicago truncatula mtr-miR5211 mature miRNA
Sequence 14 - UCGCAGGAGUGAUGGGACCGGC - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010