miRBase entry: mtr-MIR5205c

Stem-loop mtr-MIR5205c


Accession
MI0018242
Description
Medicago truncatula mtr-MIR5205c precursor miRNA

Literature search
1 open access papers mention mtr-MIR5205c
(1 sentences)

Sequence

aaaaggguCUUAUAAUUAGGGACGGAGGUAGUauugauuggacggcuacugaugaucugaaugcaugacaugaauacauuuuuuucuuugacauuaacaaauccuguggccguuucucuuugucuuuuauuauguuagcccguuucccuc
....((((..((((((.(((((((((((...........((((((((((.(((......((((((......(((.....)))......)).)))).....)))..)))))))))).))))))))))).))))))...)))).........

Structure
-----aaaa    -CU      U           UAGUauugauu          -u   gaucug    -  ugacau   u 
         gggu   UAUAAU AGGGACGGAGG           ggacggcuac  gau      aaug ca      gaa a
         ||||   |||||| |||||||||||           ||||||||||  |||      |||| ||      ||| c
         cccg   guauua uuucuguuucu           uuugccggug  cua      uuac gu      uuu a
cucccuuug    auu      u           ----------c          uc   -aacaa    a  uucuuu   u 


Annotation confidence Not enough data
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Genome context
chr6: 8755342-8755491 [-]

Database links

Mature mtr-miR5205c

Accession MIMAT0021135
Description Medicago truncatula mtr-miR5205c mature miRNA
Sequence 9 - CUUAUAAUUAGGGACGGAGGUAGU - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010