Stem-loop mtr-MIR5204

Accession

MI0018239

Description

Medicago truncatula mtr-MIR5204 precursor miRNA

Gene family

MIPF0001295; MIR862_2

Literature search

1 open access papers mention mtr-MIR5204
(1 sentences)

Sequence

aacuuuucauguucccucaaaggcuuccaguauucggucauauaauuacuugaauGCUGGAAGGUUUUGUAGGAACuugauagcuu
......(((.(((((..(((((.((((((((((((((............)))))))))))))).)))))..))))).)))......

Structure

aacuuu   u     cu     g              ucaua 
      uca guucc  caaag cuuccaguauucgg     u
      ||| |||||  ||||| ||||||||||||||      
      agu CAAGG  GUUUU GAAGGUCGuaaguu     a
uucgau   u     AU     G              cauua 

Annotation confidence Not enough data

Genome context

chr7: 23966861-23966946 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR5204

Mature mtr-miR5204

• Accession: MIMAT0021132
• Description: Medicago truncatula mtr-miR5204 mature miRNA
• Sequence: 56 - GCUGGAAGGUUUUGUAGGAAC - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010