miRBase entry: bdi-MIR5054

Stem-loop bdi-MIR5054


Accession
MI0018238
Description
Brachypodium distachyon bdi-MIR5054 precursor miRNA


Sequence

ccuccgugguugaugcguuguggauugagaacagcauggucaagaagaucguagaucugaugcacuucuUCCCCACGGUCGGCGCCAaugacgagga
((((.((.((((.((((((((((...(((((..((((((((..((...))...))))..))))..)))))..)))))).).))).)))).)))))).

Structure
-    c  g    a   - -      auu     ca    --    -aa  a 
 ccuc gu guug ugc g uugugg   gagaa  gcau  gguc   ga  
 |||| || |||| ||| | ||||||   |||||  ||||  ||||   || g
 ggag ca uaAC GCG C GGCACC   Uucuu  cgua  cuag   cu  
a    -  g    C   G U      -CC     ca    gu    aug  a 


Annotation confidence Not enough data
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Genome context
3: 21161853-21161949 [+]

Database links

Mature bdi-miR5054

Accession MIMAT0020763
Description Brachypodium distachyon bdi-miR5054 mature miRNA
Sequence 70 - UCCCCACGGUCGGCGCCA - 87
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129