Stem-loop sequence bdi-MIR5200c

Accession

MI0018232 (change log)

Previous IDs

bdi-MIR5200

Description

Brachypodium distachyon miR5200c stem-loop

Gene family

MIPF0001904; MIR5200

Literature search

3 open access papers mention bdi-MIR5200c
(19 sentences)

Stem-loop

                          g   ca    c     cacc 
5' uaaagccuuagggaguaucuaca ugg  agua uuuuc    a
   ||||||||||||||||||||||| |||  |||| |||||     
3' auuucggaaucucucauagaugu acc  ucau agaag    a
                          g   -a    a     aaag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Bd21; GCA_000005505.1): 1: 47483433-47483519 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bdi-MIR5200c

• bdi-MIR5200c: 1: 47483433-47483519 [-]
• bdi-MIR5200b: 1: 47483427-47483527 [+]

Database links

• miRBase Tracker:MI0018232

Mature sequence bdi-miR5200c

• Accession: MIMAT0020757
• Previous IDs: bdi-miR5200
• Sequence: 65 - uguagauacucucuaaggcuu - 85
• Evidence: experimental; Illumina [1]

References

1. PMID:19772667 "Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response" Zhang J, Xu Y, Huan Q, Chong K BMC Genomics. 10:449(2009).